Dichotomous keys and environmental DNA

Organisms (Unity and diversity) · Diversity of organisms · note 7 of 7

Spec A3.1.14, A3.1.15
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Dichotomous keys and environmental DNASpec A3.1.14, A3.1.15

In short

A dichotomous key identifies organisms through a series of paired choices between observable features, each leading to another pair or a name. Environmental DNA is DNA that organisms shed into soil or water. Sequencing short barcode regions in a sample and matching them to a reference database identifies the species present, so habitat biodiversity can be investigated rapidly.

Dichotomous keys

A dichotomous key is a series of numbered steps, each with two contrasting descriptions. Choosing the description that fits leads either to another step or to the name of the organism.

A key to common invertebrates found in leaf litter
StepDescriptionGo to
1aThree pairs of legs2
1bMore than three pairs of legs3
2aHard wing cases covering the abdomenbeetle
2bNo wing cases; narrow waist between thorax and abdomenant
3aFour pairs of legsspider
3bMore than four pairs of legs4
4aSeven pairs of legs; body covered by overlapping plateswoodlouse
4bMany pairs of legs; long, segmented body5
5aOne pair of legs on each body segmentcentipede
5bTwo pairs of legs on each body segmentmillipede
Practical skill:

Build your key from local species you can observe. Use features that are easy to see and do not vary within a species, such as leg number or leaf arrangement, not size or colour. Test the key on specimens and revise any step that gives the wrong name.

Dichotomous key drawn as a flow chart: five numbered questions, each with two arrows (1a to 5b), leading to outline drawings of a beetle, ant, spider, woodlouse, centipede and millipede. (opens full size in a new tab)
The leaf-litter key as a flow chart: each numbered step has two contrasting choices.

Environmental DNA and barcodes

Organisms constantly shed cells, mucus, faeces and gametes, so soil and water contain their DNA. This is environmental DNA (eDNA). A DNA barcode is a short, standard section of the genome that differs between species, for example part of a mitochondrial gene in animals or a chloroplast gene in plants.

  1. Collect a sample of water, soil or sediment from the habitat.
  2. Extract the DNA from the sample.
  3. Copy the barcode region by PCR, using primers that bind to sequences shared by a whole group of organisms.
  4. Sequence the copied DNA.
  5. Compare each sequence with a reference database of barcodes from identified species to find which species are present.

Using barcodes and eDNA allows the biodiversity of habitats to be investigated rapidly. It can detect rare, hidden or microscopic species without catching or even seeing them, for example great crested newts in a pond from a water sample. Limits: a species can only be named if its barcode is in the database, and DNA can drift in from elsewhere or persist after the organism has gone.

Five-step eDNA workflow: a person collects a water sample from a pond; DNA is extracted through a filter into a tube; the barcode region is copied in a PCR machine; the DNA is sequenced; sequences are matched to a reference database on a computer listing species found. (opens full size in a new tab)
Using eDNA and barcodes: sample, extract, copy by PCR, sequence, then match to a reference database.

Quick check

  1. In a binomial, which part has a capital letter?

    Show answer

    The genus name (first part). The species name is all lowercase.

  2. State the biological species concept.

    Show answer

    A species is a group of organisms that can breed and produce fertile offspring.

  3. How many chromosomes do humans and chimpanzees have?

    Show answer

    Humans 46, chimpanzees 48.

  4. What is a genome?

    Show answer

    All the genetic information of an organism.

  5. HL only Why is a mule infertile?

    Show answer

    Its parents have different chromosome numbers, so its chromosomes cannot all pair in meiosis and viable gametes are not produced.

Written and checked against the IB Biology HL specification · Updated October 2026

Frequently asked questions

What is the difference between the morphological and biological species concepts?

The morphological concept, used by Linnaeus, groups organisms into a species because they share traits. The biological species concept defines a species as a group of organisms that can breed and produce fertile offspring. The biological concept focuses on interbreeding, so it can separate species that look alike but cannot breed together.

Why is it hard to define a species?

Speciation happens gradually, so diverging populations pass through stages where they are partly different, and deciding whether they are one species or two can be arbitrary. Interbreeding also cannot be tested for fossils or separated populations, and some species produce fertile hybrids, so competing species definitions exist.

What is the evidence that human chromosome 2 formed by fusion?

Its banding pattern matches two chimpanzee chromosomes placed end to end, and it has telomere sequences near its middle, where the ends of two chromosomes joined. It also has the remains of a second, inactive centromere. This supports fusion of two ancestral chromosomes, reducing the number from 48 to 46.

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