Epigenetic inheritance and the environment

Cells (Continuity and change) · Gene expression · note 3 of 4

Spec D2.2.7, D2.2.8, D2.2.9, D2.2.10
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Epigenetic inheritance and the environmentSpec D2.2.7, D2.2.8, D2.2.9, D2.2.10

In short

Epigenetic inheritance is the passing of changes in gene expression to daughter cells or offspring without any change in the DNA base sequence. It happens when tags such as DNA methylation stay in place through mitosis or meiosis. The environment, such as air pollution, can alter tags, and most but not all tags are removed from gametes.

Epigenetic inheritance is the passing on of phenotypic changes in a cell or organism to daughter cells or offspring without changes in the nucleotide sequence of DNA. This can happen if epigenetic tags, such as DNA methylation or histone modification, remain in place during mitosis or meiosis.

In mitosis, methylation patterns are copied onto new DNA, so a differentiated cell such as a skin cell produces more skin cells. This is how a tissue keeps its pattern of gene expression.

Environmental effects on gene expression

The environment can change epigenetic tags. Air pollution is the example to learn. Studies of people exposed to high levels of air pollution, such as fine particles and polycyclic aromatic hydrocarbons (PAHs) from traffic and burning fuels, have found altered methyl tags on DNA in their blood cells. Some genes gain methyl tags and others lose them. For example, children with asthma living in a city with heavily polluted air had more methylation of the promoter of FOXP3, a gene needed by regulatory T cells that dampen immune responses, than children with asthma in a cleaner city. More methylation means less transcription, so their regulatory T cells worked less well, which is linked to worse asthma symptoms.

Removal of most but not all tags from gametes

During the formation of the ovum and sperm, and soon after fertilisation, most epigenetic tags are removed, so the zygote can develop all cell types. Not all are removed. Some genes keep tags that depend on which parent they came from. This is genomic imprinting: for an imprinted gene, the copy from one parent is silenced by methylation, so the gene is expressed only from the mother's copy or only from the father's copy. Several imprinted genes control growth before birth. In general, some growth-promoting genes are expressed only from the father's copy, and some growth-restraining genes only from the mother's copy.

Tigons and ligers (lion–tiger hybrids)
HybridParentsPhenotype
LigerMale lion × female tigerGrows much larger than either parent
TigonMale tiger × female lionSimilar in size to, or smaller than, the parents

Both hybrids have one set of chromosomes from a lion and one from a tiger, so the difference in size is put down to epigenetics: which parent each set of imprinted genes came from. The most widely accepted hypothesis is this. In lions, the paternal growth-promoting imprinting is strong, and it is balanced by strong maternal growth-restraining imprinting in lionesses. In tigers, both effects are weaker. A liger inherits strong growth promotion from its lion father but only weak restraint from its tigress mother, so it grows much larger than either parent. A tigon inherits only weak growth promotion from its tiger father but strong restraint from its lioness mother, so it is no larger than its parents and is often smaller.

Two crosses: male lion × female tiger gives a liger (very large), with a thick arrow for strong paternal growth-promoting imprinting and a thin arrow for weak maternal growth-restraining imprinting; male tiger × female lion gives a tigon (normal or small size), with a thin arrow for weak paternal growth-promoting imprinting and a thick arrow for strong maternal growth-restraining imprinting. (opens full size in a new tab)
Genomic imprinting explains why ligers grow much larger than tigons. Arrow thickness shows the strength of each effect.

Monozygotic twin studies

Monozygotic (identical) twins develop from one zygote, so they have the same genome. Any differences between them must come from the environment and its effect on gene expression. Studies comparing twins show that their methylation patterns are very similar when they are young but become more different as they get older, especially if they have lived apart with different diets, habits and exposures. This shows the environment changing epigenetic tags.

Exam tip:

Linking question: in what ways does the environment stimulate diversification? Twin studies are the classic evidence that the same genotype can produce different phenotypes through epigenetic changes.

Written and checked against the IB Biology HL specification · Updated October 2026

Frequently asked questions

What is the difference between the genome, transcriptome and proteome?

The genome is all the genetic information of a cell, and it is the same in every cell of an organism. The transcriptome is all the RNA transcribed in a cell at one time, and the proteome is all the proteins it makes. These differ between cells because no cell expresses all of its genes.

What is epigenetics in simple terms?

Epigenetics is the study of changes in gene expression that do not change the DNA base sequence. Tags such as methyl groups on cytosine in promoters or on histones switch genes on or off. They alter the phenotype but not the genotype, and some can be passed to daughter cells or offspring.

How does DNA methylation affect gene expression?

Methylation of cytosine bases in the promoter of a gene represses transcription, so the gene downstream is not expressed. Methylation of amino acids in histones can either repress or activate transcription. In both cases the base sequence is unchanged; only the pattern of gene expression is altered.

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