Roles of helicase and DNA polymerase

Molecules (Continuity and change) · DNA replication · note 2 of 6

Roles of helicase and DNA polymeraseSpec D1.1.3

In short

Helicase is the enzyme that unwinds the DNA double helix and breaks the hydrogen bonds between the two strands, separating them so each can act as a template. DNA polymerase then links free DNA nucleotides, matched to the template by complementary base pairing, into a new strand by forming covalent bonds in the sugar–phosphate backbone.

Two enzymes are central to replication.

Helicase
Unwinds the double helix and separates the two strands by breaking the hydrogen bonds between complementary bases. Each separated strand can then act as a template.
DNA polymerase
Assembles a new strand: it brings free DNA nucleotides into position opposite their complementary bases on the template strand and links them together with covalent (phosphodiester) bonds to form the sugar–phosphate backbone.
  1. Helicase moves along the DNA, unwinding it and breaking hydrogen bonds between base pairs, so the strands separate.
  2. Free DNA nucleotides pair with exposed bases on each template strand (A–T, C–G).
  3. DNA polymerase links the paired nucleotides into a continuous new strand.
  4. Two DNA molecules result, each with one old and one new strand.
Exam tip:

Say helicase breaks hydrogen bonds between bases, not covalent bonds. DNA polymerase forms covalent bonds between adjacent nucleotides of the new strand.

Written and checked against the IB Biology HL specification · Updated October 2026

Frequently asked questions

Why is DNA replication semi-conservative?

DNA replication is semi-conservative because the two strands of the original molecule separate and each acts as a template for a new strand. Each daughter molecule therefore keeps one original strand and gains one new strand. Complementary base pairing makes the new strand match the old partner, so both copies have identical base sequences.

What are the three stages of PCR?

The three stages of PCR are denaturation, annealing and extension. At about 95 °C hydrogen bonds break and the strands separate; at about 55 °C primers bind to the ends of the target sequence; at about 72 °C heat-stable Taq polymerase builds new strands. Each cycle doubles the number of copies.

How does gel electrophoresis separate DNA fragments?

Gel electrophoresis separates DNA fragments by length. DNA is negatively charged because of its phosphate groups, so when a voltage is applied it moves through the gel towards the positive electrode. Smaller fragments move through the gel mesh more easily, so they travel further than larger fragments in the same time.

All 5 questions on DNA replication