Intracellular and extracellular reactions, heat and metabolic pathways

Molecules (Interaction and interdependence) · Enzymes and metabolism · note 5 of 7

Spec C1.1.11, C1.1.12, C1.1.13
HL only (what this means)HL only: additional Higher Level content, only for HL students. SL students can skip it. What the labels mean
Download all Enzymes and metabolism notes (PDF)Download all notes (PDF)10 pages

Intracellular and extracellular reactions, heat and metabolic pathwaysSpec C1.1.11, C1.1.12, C1.1.13

In short

Intracellular enzymes catalyse reactions inside cells, such as glycolysis in the cytoplasm and the Krebs cycle in the mitochondrial matrix. Extracellular enzymes are secreted and act outside cells, as in chemical digestion in the gut. Metabolic reactions are never 100% efficient, so heat is always generated. Pathways are linear, like glycolysis, or cyclical, like the Krebs and Calvin cycles.

Intracellular and extracellular enzymes

Where enzyme-catalysed reactions happen
IntracellularExtracellular
Where the enzyme actsInside the cell that made itOutside the cell that made it, after secretion by exocytosis
ExamplesGlycolysis (cytoplasm); Krebs cycle (mitochondrial matrix)Chemical digestion in the gut lumen, e.g. amylase, proteases and lipase
WhyProducts are used within the cellFood macromolecules are too large to enter cells, so they must be hydrolysed first

Heat from metabolism

No metabolic reaction is 100% efficient in energy transfer. Some energy is always transferred to the surroundings as heat, so heat generation is inevitable. Mammals and birds (and some other animals, such as some large fish and insects) depend on this heat to maintain a constant body temperature. They can increase heat output by increasing the rate of metabolic reactions, for example by shivering.

Linear and cyclical pathways

In a linear pathway, the substrate is converted through a chain of intermediates to an end product, each step catalysed by a different enzyme. Glycolysis is linear: glucose is converted step by step to pyruvate.

In a cyclical pathway, the last step regenerates the molecule that started the cycle, so intermediates are not used up. In the Krebs cycle an acetyl group joins oxaloacetate and oxaloacetate is regenerated. In the Calvin cycle CO₂ is fixed by RuBP and RuBP is regenerated.

Comparison of a linear pathway (glucose to two intermediates to pyruvate, each step catalysed by enzyme 1, 2 and 3, as in glycolysis) with a cyclical pathway in which an acetyl group (2C) joins oxaloacetate (4C) to form citrate (6C) and oxaloacetate is regenerated, as in the Krebs cycle. (opens full size in a new tab)
Linear pathways end in a product; in a cyclical pathway the starting molecule is regenerated.
Exam tip:

To classify a pathway, ask whether the starting molecule is regenerated. If it is, the pathway is cyclical; if the substrate is used up to form an end product, it is linear.

Written and checked against the IB Biology HL specification · Updated October 2026

Frequently asked questions

Why do enzymes denature at high temperatures?

Enzymes denature at high temperatures because extra vibration breaks the bonds holding the protein's three-dimensional structure. The active site changes shape and chemical properties, so the substrate can no longer bind and no enzyme–substrate complexes form. This is why the rate falls steeply above the optimum temperature, and the change is usually permanent.

What is the induced-fit model of enzyme action?

The induced-fit model says that both the substrate and the enzyme change shape when the substrate binds to the active site. The active site moulds more tightly around the substrate, which stresses bonds in the substrate and lowers the activation energy. After the products leave, the active site returns to its original shape.

Why does the rate of an enzyme reaction level off at high substrate concentration?

The rate levels off because nearly all the active sites are occupied at any moment. Adding more substrate cannot increase the number of successful substrate–active site collisions, so enzyme concentration becomes the limiting factor. At low substrate concentrations, by contrast, more substrate means more frequent collisions and a faster rate.

All 5 questions on Enzymes and metabolism