Gene pools and allele frequencies

Ecosystems (Continuity and change) · Natural selection · note 5 of 7

Spec D4.1.9, D4.1.10, D4.1.11
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Gene pools and allele frequenciesSpec D4.1.9, D4.1.10, D4.1.11

In short

A gene pool consists of all the genes and their different alleles present in a population. Geographically isolated populations have no gene flow between them, so their allele frequencies diverge. Natural selection changes allele frequencies because individuals with fitter heritable traits reproduce more. Combining Darwin's theory with genetics is called neo-Darwinism.

Gene pool
All the genes and their different alleles present in a population.
Allele frequency
The proportion of all copies of a gene in a population that are a particular allele, given as a value from 0 to 1.

Geographically isolated populations

When populations are geographically isolated, alleles do not flow between them. Different mutations arise, selection pressures differ, and chance events change allele frequencies, so the gene pools diverge.

  • Lactase persistence (digesting lactose as an adult): over 90% of people in Sweden and Denmark have it, and it is common in some pastoralist groups in East Africa, but rare (5% or less) in most East Asian populations. Different lactase-persistence alleles (different mutations near the lactase gene) are responsible in Europe and in East Africa.
  • ABO blood groups: the Iᴮ allele is most frequent in Central and South Asia, while many Indigenous populations of South America have almost only the i allele (blood group O).
Practical skill:

Use an allele frequency database (for example the Allele Frequency Net Database or gnomAD) to compare one human allele across populations, and record the population, sample size and frequency.

Natural selection changes allele frequencies

Individuals differ in their heritable traits. Those with traits giving higher fitness leave more offspring, so the alleles for those traits make up a larger share of the next generation's gene pool. Evolution can therefore be described as a change in allele frequency in a gene pool over time.

Darwin developed the theory of evolution by natural selection without knowing about genes. Biologists later integrated genetics with natural selection in what is now known as neo-Darwinism.

Written and checked against the IB Biology HL specification · Updated October 2026

Frequently asked questions

How does natural selection lead to evolution?

Natural selection leads to evolution by making useful heritable traits more common over generations. Individuals vary, more offspring are produced than can survive, and those with better-adapted traits survive and reproduce more. They pass their alleles to offspring, so the allele frequencies of the population change over many generations.

What is the difference between Darwinism and Lamarckism?

Darwinism explains evolution by natural selection acting on heritable variation, while Lamarckism claimed that characteristics acquired during life were passed on. Acquired characteristics are not encoded in the base sequence of genes, so they cannot be inherited. Darwin's theory replaced Lamarckism, an example of a paradigm shift in biology.

What did Endler's guppy experiment show?

Endler's experiment showed that male guppy colour is a balance between sexual and natural selection. In ponds with no predator or only the weak predator Rivulus, males evolved more spots because females prefer colourful mates. In ponds with the dangerous pike cichlid, males evolved fewer spots because bright males were eaten.

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