Recognising organelles in electron micrographs

Cell Structure, Reproduction and Development · Cells, tissues and organelles · note 6 of 6

Recognising organelles in electron micrographsSpec 3.6

In short

In electron micrographs each organelle has a recognisable appearance. Mitochondria are oval with a folded inner membrane, rough ER is a stack of flattened sacs studded with dots, the Golgi apparatus is a stack of curved sacs with vesicles, and the nucleus has a double envelope with pores and a dark nucleolus.

Electron micrographs are black and white (any colour is added afterwards), and organelles are cut in section, so the shapes you see depend on how they were sliced. Look for these features.

How to recognise organelles in a transmission electron micrograph
OrganelleWhat you see
NucleusLarge, round or oval, with a double membrane broken by pores; dark patches of chromatin; a darker, denser nucleolus
MitochondrionSmall oval or rod shape with a double membrane; the inner membrane folded into cristae, showing as lines or fingers inside
Rough ERParallel flattened sacs, often continuous with the nuclear envelope, with many tiny black dots (ribosomes) on the outer surface
Smooth ERBranching tubules or sacs with no dots on the surface
Golgi apparatusA stack of curved, flattened sacs, often with small vesicles near the ends
LysosomeSmall, round, single membrane, with dense, evenly dark contents
RibosomesVery small black dots, free or on rER
CentriolesA pair of short cylinders at right angles: one is seen as a ring of microtubules in cross-section and the other lengthways
Exam tip:

Describe what you see rather than guessing: 'double membrane with folded inner membrane' earns the mark for mitochondrion, and you can use it to identify the organelle.

Six grey drawings of organelles as they look in transmission electron micrographs: nucleus with envelope, pores, chromatin and nucleolus; mitochondrion with outer and inner membranes, cristae and matrix; rough ER as flattened sacs with ribosomes; Golgi apparatus as a stack of curved sacs with vesicles; a lysosome with a single membrane and dark contents; and a pair of centrioles, one lengthways and one in cross-section showing nine triplets of microtubules. (opens full size in a new tab)
What to look for in a transmission electron micrograph.

Quick check

  1. Name three features found in all living cells.

    Show answer

    Any three of: cell surface membrane, cytoplasm, DNA (genetic material), ribosomes, enzyme-controlled metabolic reactions.

  2. What is the function of the nucleolus?

    Show answer

    It makes ribosomal RNA and assembles ribosome subunits.

  3. Name the organelle that makes lysosomes.

    Show answer

    The Golgi apparatus.

  4. How does prokaryotic DNA differ from eukaryotic DNA?

    Show answer

    It is circular, not associated with histones and not enclosed in a nucleus.

  5. What are the features of a mitochondrion in an electron micrograph?

    Show answer

    Oval shape, a double membrane and an inner membrane folded into cristae.

Written and checked against the Edexcel International AS Level Biology (XBI11) specification · Updated October 2026

Frequently asked questions

What is the difference between a tissue, an organ and an organ system?

A tissue is a group of similar cells doing the same job. An organ is a group of different tissues working together for one function, such as the stomach. An organ system is several organs working together for a major body function, such as the digestive system.

What does the Golgi apparatus do?

The Golgi apparatus receives proteins from the rough ER in transport vesicles, modifies them (for example by adding carbohydrate to make glycoproteins), then packages them into secretory vesicles. It also makes lysosomes, which contain hydrolytic enzymes, so it acts as the cell's processing and packaging centre.

How do prokaryotic cells differ from eukaryotic cells?

Prokaryotic cells have no nucleus or membrane-bound organelles. Their DNA is a circular loop lying free in the cytoplasm, they have smaller 70S ribosomes, and they have a peptidoglycan cell wall. Eukaryotic cells have a nucleus with linear DNA, larger 80S ribosomes and membrane-bound organelles such as mitochondria.

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