Ultrastructure of eukaryotic cells

Cell Structure, Reproduction and Development · Cells, tissues and organelles · note 3 of 6

Ultrastructure of eukaryotic cellsSpec 3.3

In short

Eukaryotic cells contain organelles, each with a structure suited to its function. The nucleus holds DNA, the nucleolus makes ribosomal RNA, ribosomes make proteins, rough ER transports proteins, smooth ER makes lipids, mitochondria release ATP, centrioles form the spindle, lysosomes digest, and the Golgi apparatus modifies and packages proteins.

Ultrastructure is the fine detail of a cell that can only be seen with an electron microscope. The organelles you need to know are summarised below.

Eukaryotic organelles: structure and function
OrganelleStructureFunction
NucleusSurrounded by a double membrane (nuclear envelope) with nuclear pores; contains chromatin (DNA wound round histone proteins)Stores genetic information; DNA is transcribed here; pores let mRNA out and proteins in; site of DNA replication
NucleolusDense, darkly staining region inside the nucleus, with no membraneMakes ribosomal RNA (rRNA) and assembles it with proteins into ribosome subunits
RibosomesTiny, made of rRNA and protein, no membrane; free in the cytoplasm or attached to rough ERSite of protein synthesis (translation)
Rough endoplasmic reticulum (rER)System of flattened, membrane-bound sacs (cisternae) continuous with the nuclear envelope, with ribosomes on the outer surfaceProteins made on its ribosomes enter the lumen, where they are folded and transported
Smooth endoplasmic reticulum (sER)Network of membrane-bound tubules with no ribosomesSynthesises and transports lipids and steroids (for example steroid hormones)
MitochondrionDouble membrane; inner membrane folded into cristae; fluid matrix insideSite of aerobic respiration, producing ATP; cristae give a large surface area for the enzymes of the electron transport chain
CentriolesA pair of short hollow cylinders at right angles to each other, each made of microtubules; found in animal cellsForm the spindle (organise the microtubules) during nuclear division
LysosomeSmall, round, single-membrane-bound sac, made by the Golgi apparatus, containing hydrolytic (digestive) enzymesDigests worn-out organelles and material brought into the cell, such as bacteria engulfed by phagocytosis; can break down the cell itself after death
Golgi apparatusA stack of flattened, membrane-bound sacs with vesicles budding from the edgesModifies proteins (for example adds carbohydrate to make glycoproteins), packages them into vesicles, and makes lysosomes
Common mistake:

Mitochondria do not 'make energy'. Say they produce ATP by aerobic respiration, which is the immediate source of energy for the cell.

Labelled drawing of an animal cell as seen with an electron microscope, showing the nucleus with nuclear envelope, nuclear pores, chromatin and nucleolus, rough and smooth endoplasmic reticulum, ribosomes, Golgi apparatus, mitochondria, lysosome, centrosome with two centrioles, secretory vesicle and cell surface membrane. (opens full size in a new tab)
Ultrastructure of a generalised animal cell. Only some animal cells have a flagellum.Image: Mariana Ruiz Villarreal (LadyofHats), Public domain, via Wikimedia Commons

Written and checked against the Edexcel International AS Level Biology (XBI11) specification · Updated October 2026

Frequently asked questions

What is the difference between a tissue, an organ and an organ system?

A tissue is a group of similar cells doing the same job. An organ is a group of different tissues working together for one function, such as the stomach. An organ system is several organs working together for a major body function, such as the digestive system.

What does the Golgi apparatus do?

The Golgi apparatus receives proteins from the rough ER in transport vesicles, modifies them (for example by adding carbohydrate to make glycoproteins), then packages them into secretory vesicles. It also makes lysosomes, which contain hydrolytic enzymes, so it acts as the cell's processing and packaging centre.

How do prokaryotic cells differ from eukaryotic cells?

Prokaryotic cells have no nucleus or membrane-bound organelles. Their DNA is a circular loop lying free in the cytoplasm, they have smaller 70S ribosomes, and they have a peptidoglycan cell wall. Eukaryotic cells have a nucleus with linear DNA, larger 80S ribosomes and membrane-bound organelles such as mitochondria.

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