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Cell biology, subtopic 1 of 3Spec 4.1.1

Cell structure

Eukaryotic and prokaryotic cells, sub-cellular structures, specialised cells, differentiation, microscopy and culturing microorganisms.

9 sections, with a quick check at the end.

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Eukaryotes and prokaryotesSpec 4.1.1.1

Plant and animal cells are eukaryotic cells. They have a cell membrane, cytoplasm and genetic material enclosed in a nucleus.

Bacterial cells are prokaryotic cells. They are much smaller in comparison. They have cytoplasm and a cell membrane surrounded by a cell wall. The genetic material is not enclosed in a nucleus. It is a single DNA loop, and there may be one or more small rings of DNA called plasmids.

Eukaryotic and prokaryotic cells compared
Eukaryotic cell (plant, animal)Prokaryotic cell (bacterium)
SizeLargerMuch smaller
Genetic materialEnclosed in a nucleusSingle DNA loop, not enclosed in a nucleus
PlasmidsNoOne or more may be present
Cell membrane and cytoplasmYesYes
Cell wallPlant and algal cells (made of cellulose); not animal cellsYes
A rod-shaped bacterial cell labelled with cell wall, cell membrane, cytoplasm, single DNA loop and plasmid, next to an animal cell labelled with cell membrane, cytoplasm and nucleus.Tap to enlarge
A bacterial (prokaryotic) cell has a single DNA loop and plasmids, but no nucleus. Not to scale: bacteria are much smaller.

Scale and size of cells

You need to understand the scale and size of cells and be able to make order of magnitude calculations. An order of magnitude is a power of ten. A cell that is 100 times wider than another is two orders of magnitude bigger, because 100 = 10².

Prefixes and units of length
PrefixSymbolStandard form (compared with 1 m)Example
centic× 10⁻²1 cm = 0.01 m
millim× 10⁻³1 mm = 0.001 m
microµ× 10⁻⁶1 µm = 0.000 001 m
nanon× 10⁻⁹1 nm = 0.000 000 001 m

To change units: 1 mm = 1000 µm and 1 µm = 1000 nm. Standard form is a number between 1 and 10 multiplied by a power of ten, for example 0.000 004 m = 4 × 10⁻⁶ m.

Order of magnitude

A plant cell is 100 µm long. A bacterium is 1 µm long. How many orders of magnitude longer is the plant cell?

  1. Divide the larger length by the smaller: 100 ÷ 1 = 100.
  2. Write the answer as a power of ten: 100 = 10².

Answer: The plant cell is 10² (100) times longer, which is two orders of magnitude.

Standard form

A cell is 0.000 025 m wide. Write this in standard form, then in µm.

  1. Move the decimal point to give a number between 1 and 10: 2.5.
  2. Count the places moved: 5. Because the number is small, the power is negative: 2.5 × 10⁻⁵ m.
  3. To convert to µm, multiply metres by 1 000 000: 0.000 025 × 1 000 000 = 25.

Answer: 2.5 × 10⁻⁵ m, which is 25 µm.

Animal and plant cellsSpec 4.1.1.2

Most animal cells have: a nucleus, cytoplasm, a cell membrane, mitochondria and ribosomes. In addition, plant cells often have: chloroplasts and a permanent vacuole filled with cell sap. Plant and algal cells also have a cell wall made of cellulose, which strengthens the cell.

Sub-cellular structures and their functions
StructureFunctionAnimal cellPlant cellBacterial cell
NucleusContains the genetic material (DNA) and controls the activities of the cellYesYesNo
CytoplasmWhere most chemical reactions happenYesYesYes
Cell membraneControls the movement of substances into and out of the cellYesYesYes
MitochondriaWhere aerobic respiration takes place, releasing energy for the cellYesYesNo
RibosomesWhere proteins are made (protein synthesis)YesYesYes
Cell wallStrengthens the cell; made of cellulose in plant and algal cellsNoYesYes (not cellulose)
ChloroplastsContain chlorophyll, which absorbs light energy for photosynthesisNoYes (often)No
Permanent vacuoleFilled with cell sap; helps keep the cell firmNoYesNo
PlasmidSmall ring of extra DNANoNoPossibly
An animal cell and a plant cell side by side, both labelled with nucleus, cytoplasm, cell membrane, mitochondria and ribosomes, with the plant cell also labelled with cell wall, chloroplast and permanent vacuole.Tap to enlarge
Plant cells have the same structures as animal cells, plus a cell wall, chloroplasts and a permanent vacuole.

Estimating size and area

You should be able to use estimations to judge the relative size or area of sub-cellular structures. Round the measurements to easy numbers and compare them. Use an estimate when you only need to know roughly how much bigger one structure is than another, or to check that a calculated answer is sensible.

Estimating relative size

In a micrograph, a cell is 62 mm across and its nucleus is 19 mm across. Estimate how many times wider the cell is than the nucleus.

  1. Round the numbers: 62 mm is about 60 mm and 19 mm is about 20 mm.
  2. Divide: 60 ÷ 20 = 3.

Answer: The cell is roughly 3 times wider than the nucleus.

Required practical 1: using a light microscopeSpec 4.1.1.2

  1. Place a thin piece of tissue (for example onion epidermis, or cheek cells) on a clean microscope slide. Add a drop of water or a stain such as iodine solution.
  2. Lower a cover slip onto the specimen at an angle, using a mounting needle, so that no air bubbles are trapped.
  3. Clip the slide onto the stage. Select the lowest-power objective lens and turn the coarse focusing knob until the specimen is roughly in focus.
  4. Use the fine focusing knob to get a sharp image. Then switch to a higher-power objective lens and refocus with the fine focusing knob only.
  5. Draw what you see using a sharp pencil. Use clear, unbroken lines, no shading, and make the drawing large. Draw only a few cells accurately rather than many badly.
  6. Label the sub-cellular structures with straight label lines that do not cross. Add a title and the magnification.

To find the total magnification of a light microscope, multiply the magnification of the eyepiece lens by the magnification of the objective lens. The magnification of your drawing is found with the equation magnification = size of image ÷ size of real object, using the width of your drawing and the real width of the cell.

Safety: carry the microscope with two hands, handle glass slides and cover slips carefully, and take care with the stain, which can mark skin and clothes. Start with the lowest-power lens so that the objective lens does not hit the slide.

Cell specialisationSpec 4.1.1.3

Cells may be specialised to carry out a particular function. You should be able to explain how the structure of different types of cell relate to their function in a tissue, an organ or organ system, or the whole organism, when you are given appropriate information.

Specialised cells in animals and plants
CellFunctionHow its structure helps
Sperm cellCarries the male genetic information to the eggTail for swimming; many mitochondria to release the energy needed to swim; streamlined head; enzymes in the head to break into the egg; nucleus containing genetic information
Nerve cellCarries electrical impulses around the bodyLong (extended) so it can carry impulses over long distances; branched connections at the ends to connect with other nerve cells and organs
Muscle cellContracts (shortens) to cause movementContains protein fibres that can slide to make the cell shorten; many mitochondria to release energy for contraction; may store glycogen as an energy source
Root hair cellAbsorbs water and mineral ions from the soilLong hair-like projection gives a large surface area; thin cell wall; many mitochondria to release energy for active transport of mineral ions
Xylem cellCarries water and mineral ions up the plantJoined end to end to form a hollow tube with no end walls and no cytoplasm; walls strengthened (by lignin)
Phloem cellCarries dissolved sugars around the plantElongated cells joined end to end to form tubes; pores in the end walls let cell sap containing dissolved sugars move from one phloem cell to the next
Six specialised cells, each labelled with its adaptations: sperm cell, nerve cell, muscle cell, root hair cell, xylem cell and phloem cell.Tap to enlarge
Each specialised cell has features that suit its function.

Cell differentiationSpec 4.1.1.4

As an organism develops, cells differentiate to form different types of cells. As a cell differentiates it acquires different sub-cellular structures to enable it to carry out a certain function. It has become a specialised cell.

  • Most types of animal cell differentiate at an early stage.
  • Many types of plant cell retain the ability to differentiate throughout life.
  • In mature animals, cell division is mainly restricted to repair and replacement.

Differentiation is important because it allows cells to become specialised, with the sub-cellular structures they need for a particular job. A multicellular organism made of specialised cells can carry out many different functions efficiently, as the specialised cells work together in tissues, organs and organ systems.

MicroscopySpec 4.1.1.5

Microscopy techniques have developed over time. The first microscopes used light and lenses to magnify a specimen, and these light microscopes were improved with better lenses and the use of stains. Later, electron microscopes were developed. These use electrons instead of light.

An electron microscope has much higher magnification and resolving power than a light microscope. This means that it can be used to study cells in much finer detail. This has enabled biologists to see and understand many more sub-cellular structures.

Light and electron microscopes
Light microscopeElectron microscope
MagnificationLowerMuch higher
Resolving power (resolution)LowerMuch higher
Detail seenCells and larger sub-cellular structures such as the nucleusMuch finer detail, including the internal structure of mitochondria and chloroplasts, and ribosomes
Magnification
How many times larger the image is than the real object.
Resolving power
The ability to distinguish between two points that are close together as separate points. Higher resolving power gives a sharper, more detailed image.

Magnification calculations

magnification = size of image ÷ size of real object

Rearranged: real size = image size ÷ magnification, and image size = real size × magnification. Make sure the image and real object are in the same units before you divide, then convert at the end. Give the answer in standard form if appropriate.

Calculating magnification

A drawing of a cell is 45 mm wide. The real cell is 0.15 mm wide. Calculate the magnification.

  1. Both sizes are in mm, so no conversion is needed.
  2. magnification = 45 ÷ 0.15 = 300.

Answer: × 300

Calculating real size

A cell appears 12 mm wide in an image magnified × 400. Calculate the real width in µm.

  1. real size = image size ÷ magnification = 12 ÷ 400 = 0.03 mm.
  2. Convert to µm: 0.03 × 1000 = 30 µm.

Answer: 30 µm

Culturing microorganismsSpec 4.1.1.6Triple only

Bacteria multiply by simple cell division called binary fission, as often as once every 20 minutes if they have enough nutrients and a suitable temperature.

Bacteria can be grown in a nutrient broth solution or as colonies on an agar gel plate. Uncontaminated cultures of microorganisms are required for investigating the action of disinfectants and antibiotics, so that the only microorganisms present are the ones being tested.

Preparing an uncontaminated culture using aseptic technique

  1. Sterilise the Petri dish and the agar culture medium before use (for example by heating), to kill any unwanted microorganisms.
  2. Sterilise the inoculating loop by passing it through a flame.
  3. Use the sterile loop to transfer the microorganisms to the agar. Keep the lid of the Petri dish open for as short a time as possible.
  4. Secure the lid of the Petri dish with adhesive tape and store it upside down.
  5. Incubate the plate at 25 °C.
Explaining the steps
StepReason
Sterilise Petri dishes and culture mediaKills unwanted microorganisms that could contaminate the culture
Pass the inoculating loop through a flameKills microorganisms already on the loop, so that only the intended microorganisms are transferred
Secure the lid with adhesive tapeStops microorganisms from the air getting in, and stops the cultured microorganisms escaping
Store the dish upside downCondensation drips onto the lid rather than onto the agar surface
Incubate at 25 °C in school laboratoriesReduces the chance of growing pathogens that are harmful to humans, which grow best at higher temperatures such as body temperature

Culture calculationsSpec 4.1.1.6Triple only

Number of bacteria after a certain time

You should be able to calculate the number of bacteria in a population after a certain time if you are given the mean division time. Each division doubles the population.

  1. Work out the number of divisions: total time ÷ mean division time (use the same units).
  2. Number of bacteria = starting number × 2 to the power of the number of divisions.

Bacterial population

A single bacterium divides every 20 minutes. How many bacteria are there after 2 hours?

  1. 2 hours = 120 minutes. Number of divisions = 120 ÷ 20 = 6.
  2. Number of bacteria = 1 × 2⁶ = 64.

Answer: 64 bacteria

Higher tier

Standard form

A single bacterium divides every 20 minutes. How many bacteria are there after 8 hours? Give your answer in standard form to 2 significant figures.

  1. 8 hours = 480 minutes. Number of divisions = 480 ÷ 20 = 24.
  2. Number of bacteria = 2²⁴ = 16 777 216.
  3. Move the decimal point 7 places: 1.6777216 × 10⁷. To 2 significant figures: 1.7 × 10⁷.

Answer: 1.7 × 10⁷ bacteria

Areas of colonies and clear areas

You should be able to calculate the cross-sectional area of colonies, or of clear areas around colonies, using πr². The radius is half of the diameter.

area = π × r²

Area of a clear zone

The clear zone around an antibiotic disc has a diameter of 14 mm. Calculate its cross-sectional area. Use π = 3.14.

  1. Radius = 14 ÷ 2 = 7 mm.
  2. Area = π × r² = 3.14 × 7 × 7 = 3.14 × 49 = 153.86 mm².

Answer: About 154 mm²

Required practical 2: antiseptics and antibioticsSpec 4.1.1.6Triple only

  1. Using aseptic technique, spread a sample of bacteria evenly over the surface of a sterile agar plate to make a bacterial 'lawn'.
  2. Using sterile forceps, place sterile paper discs soaked in different antiseptics or antibiotics (or different concentrations of one) onto the agar. Include a control disc soaked in sterile water.
  3. Secure the lid with adhesive tape, label the base, store the plate upside down and incubate at 25 °C for about two days.
  4. Measure the diameter of the clear area (zone of inhibition) around each disc and calculate its area using πr².

Where the antiseptic or antibiotic has killed or stopped the growth of the bacteria, there is a clear zone around the disc. The larger the zone of inhibition, the more effective the substance is against that bacterium. The control disc should have no clear zone, which shows that the water itself does not kill the bacteria.

  • Independent variable: the type or concentration of antiseptic or antibiotic.
  • Dependent variable: the size (diameter or area) of the zone of inhibition.
  • Control variables: type and amount of bacteria, type and depth of agar, size of disc, volume of solution on the disc, temperature, incubation time.

Safety: the cultures may contain harmful microorganisms. Use aseptic technique, wash hands, keep the plate taped shut, never open it after incubation, and disinfect the work area and dispose of plates safely.

Quick check

  1. How is the genetic material of a bacterial cell arranged?

    Show answer

    As a single DNA loop that is not enclosed in a nucleus. There may also be plasmids.

  2. Which sub-cellular structure is the site of aerobic respiration?

    Show answer

    Mitochondria.

  3. What is the formula for magnification?

    Show answer

    Magnification = size of image ÷ size of real object.

  4. Why does an electron microscope show more detail than a light microscope?

    Show answer

    It has much higher magnification and resolving power.

  5. Triple only: why are inoculating loops passed through a flame?

    Show answer

    To sterilise them and kill unwanted microorganisms.